PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G188300.4
Common NameB456_001G188300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 191aa    MW: 21529.4 Da    PI: 10.6711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G188300.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.9e-11108149351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Gorai.001G188300.4 108 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 149
                         79**98..47*********4.....5********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-4107164IPR001471AP2/ERF domain
PfamPF008471.4E-5107150IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-8108152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-6110154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGTSSFF TPLSRFFDNG NAPGNSSQSA KLVSVHPMPS DPIHMNGKSI  60
PKVASGSPNV SGSGSSKEHH NQPFPGQPIK RRKRHRRKHV QNQEPCLMRG VYFKNMKWQA  120
AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELS EEEKQELRKF KWEEDLNLQW  180
RTASGTTNKE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485270.11e-120PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012485278.11e-120PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D2M0G01e-142A0A0D2M0G0_G
STRINGPOPTR_0002s24750.15e-84(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-43ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]